Master Biology, Module IB27 “Sophisticated Imaging”, offered during summer term

Lecture pdfs and video recordings are available for TU Braunschweig students via StudIP.

Information and sample data for the image processing course can be accessed via GitHub.

Master Biology/Biotechnologie, Module ZB26/MZ05 “Physical Biology of the Cell”, offered during winter term

Lecture pdfs and video recordings are available for TU Braunschweig students via StudIP.

Basic CellProfiler Walkthrough

In this video, I demonstrate a simple CellProfiler pipeline that helps you to segment your image data and measure signal intensities in different compartments.

Sample data and CP pipeline can be downloaded here.

Processing a CellProfiler spreadsheet

In this video, I show how to import the exported spreadsheet from CellProfiler into python and quantify the signal per segmented organelle.

The jupyter notebook I used can be downloaded here.

Single cell segmentation using Fiji/ImageJ

In this video, I show how to use Fiji (ImageJ) to segment individual bacterial cells from an overview image and then quantify the fluorescent signal for each cell.

SMLM Tutorial

To get started in SMLM imaging and data processing, please visit this wiki on GitHub

HZI Graduate School Lectures 2020

Lecture 1: Virus-receptor interaction and membrane signaling

Lecture 2. Endocytosis and Pathogen Cell Entry

Slides available upon request.